Installation¶
Hardware requirements¶
NVIDIA GPU (tested on A40), Linux, Python (tested with v3.9)
Installation instructions¶
Prerequisites¶
scooby uses a a custom version of SnapATAC2, which can be installed with pip.
Note
This is best installed in a separate environment due to numpy version conflicts with scooby.
pip install snapatac2-scooby
Scooby package installation¶
pip install git+https://github.com/gagneurlab/scooby.gitDownload file contents from the Zenodo repo
Use examples from the scooby reproducibility repository